Variant report

Variant	rs360937
Chromosome Location	chr4:152848320-152848321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2020009	0.89[CEU][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs360904	0.81[EUR][1000 genomes]
rs360909	1.00[JPT][hapmap]
rs360911	1.00[JPT][hapmap]
rs360936	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs360943	0.81[EUR][1000 genomes]
rs360944	0.81[EUR][1000 genomes]
rs360945	0.81[EUR][1000 genomes]
rs360946	0.81[EUR][1000 genomes]
rs360951	0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs361131	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs361163	0.92[AFR][1000 genomes]
rs361170	0.88[AFR][1000 genomes]
rs511880	0.89[AMR][1000 genomes]
rs518213	0.85[CEU][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs530315	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs360937	FGG	cis	cerebellum	SCAN
rs360937	ANXA2P1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152836200-152851000	Weak transcription	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links