Variant report

Variant	rs511880
Chromosome Location	chr4:152826749-152826750
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2020009	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs360936	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs360937	0.89[AMR][1000 genomes]
rs361131	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs361156	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs361157	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs499797	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs518213	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs530315	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs551305	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv595731	chr4:152790580-152831309	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152825400-152827600	Enhancers	GM12878-XiMat	blood
2	chr4:152826000-152827800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr4:152826000-152828000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:152826200-152827200	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:152826200-152827600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr4:152826600-152826800	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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