Variant report

Variant	rs36093844
Chromosome Location	chr11:85576127-85576128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85574285..85576129-chr11:85584022..85586533,2	K562	blood:

Variant related genes	Relation type
ENSG00000150676	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10501601	0.86[CHD][hapmap]
rs10898417	0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[GIH][hapmap]
rs11234446	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11234452	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11234457	0.93[CEU][hapmap];0.90[CHB][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap]
rs11234458	0.93[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap]
rs11234462	0.93[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11234463	0.92[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs11512932	0.93[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap]
rs11826218	0.93[CEU][hapmap]
rs12271536	0.90[CHB][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap]
rs12280977	0.86[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap]
rs12361645	0.92[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12361800	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12363602	0.84[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes]
rs1445498	0.81[CEU][hapmap]
rs1445500	0.93[CEU][hapmap]
rs1445501	0.92[CEU][hapmap]
rs1445502	0.87[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap]
rs1445504	0.86[CEU][hapmap]
rs1445505	0.92[CEU][hapmap]
rs1445511	0.93[CEU][hapmap]
rs1564550	0.86[CEU][hapmap]
rs17744675	0.93[CEU][hapmap]
rs17744699	0.93[CEU][hapmap]
rs17744711	0.93[CEU][hapmap]
rs17817230	0.93[CEU][hapmap]
rs17817254	0.93[CEU][hapmap]
rs17817308	0.93[CEU][hapmap]
rs17817314	0.93[CEU][hapmap]
rs17817326	0.93[CEU][hapmap]
rs17817331	0.93[CEU][hapmap]
rs17817343	0.93[CEU][hapmap]
rs17817355	0.93[CEU][hapmap]
rs2044390	0.93[CEU][hapmap]
rs2084080	0.85[CEU][hapmap]
rs4631905	0.82[EUR][1000 genomes]
rs56160063	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56271770	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7101889	0.87[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs7102361	0.90[CEU][hapmap]
rs7113656	0.87[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs7121363	0.93[CEU][hapmap]
rs7124956	0.87[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap]
rs7128854	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7931771	0.93[CEU][hapmap]
rs7943104	0.93[CEU][hapmap]
rs7950710	0.85[YRI][hapmap]
rs895255	0.86[CEU][hapmap];0.96[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1047147	chr11:85459235-85594800	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv541114	chr11:85459235-85594800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
11	nsv898051	chr11:85554057-85620823	Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85574800-85579000	Enhancers	HepG2	liver
2	chr11:85576000-85576200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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