Variant report

Variant	rs12363602
Chromosome Location	chr11:85596401-85596402
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85589608..85591634-chr11:85594434..85597162,2	K562	blood:
2	chr11:85595243..85597275-chr11:85599038..85600664,2	MCF-7	breast:
3	chr11:85595576..85598404-chr11:85611809..85613970,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501599	0.89[JPT][hapmap]
rs10501601	0.89[JPT][hapmap]
rs10898422	0.84[CHB][hapmap]
rs11234437	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs11234450	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs11234452	0.82[AMR][1000 genomes]
rs11234455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11234457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11234458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11234460	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11234461	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11234462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11234463	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234465	0.89[JPT][hapmap]
rs11234467	0.89[JPT][hapmap]
rs11512932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs12271536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274739	0.89[JPT][hapmap]
rs12280977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286312	0.89[JPT][hapmap]
rs12291381	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12361645	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12361800	0.89[JPT][hapmap]
rs12362209	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs12363624	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1445502	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1445508	0.89[JPT][hapmap]
rs17148574	0.89[JPT][hapmap]
rs17209169	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs17817402	0.89[JPT][hapmap]
rs17817444	0.89[JPT][hapmap]
rs36093844	0.84[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes]
rs4631905	0.86[ASN][1000 genomes]
rs56160063	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7101889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7113656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7124956	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs725459	0.89[JPT][hapmap]
rs7926846	0.89[JPT][hapmap]
rs7934759	0.89[JPT][hapmap]
rs7936092	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv898051	chr11:85554057-85620823	Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv898052	chr11:85579304-85620823	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv898053	chr11:85579304-85634425	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85592800-85600400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:85595000-85597800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:85595000-85598200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:85595200-85598400	Enhancers	NHDF-Ad	bronchial
5	chr11:85595200-85598600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:85595400-85597600	Enhancers	Osteobl	bone
7	chr11:85595600-85596600	Weak transcription	Fetal Kidney	kidney
8	chr11:85595600-85597200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:85595600-85598000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:85595600-85600600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:85595800-85600600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:85595800-85601200	Weak transcription	HSMMtube	muscle
13	chr11:85596000-85597200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:85596000-85600600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:85596000-85600600	Weak transcription	Hela-S3	cervix
16	chr11:85596000-85600800	Weak transcription	HSMM	muscle
17	chr11:85596000-85601200	Weak transcription	NHLF	lung
18	chr11:85596200-85597400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:85596400-85600000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:85596400-85600800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:85596400-85600800	Weak transcription	NH-A	brain

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