Variant report

Variant	rs10898422
Chromosome Location	chr11:85582459-85582460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85580933..85583908-chr11:85954424..85956558,2	MCF-7	breast:
2	chr11:85581131..85583406-chr11:85585263..85587324,2	K562	blood:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10501599	1.00[CHD][hapmap];0.81[JPT][hapmap]
rs10501601	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs11234397	0.82[GIH][hapmap]
rs11234427	0.94[GIH][hapmap]
rs11234436	0.90[EUR][1000 genomes]
rs11234437	0.85[CHB][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11234442	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11234445	0.95[EUR][1000 genomes]
rs11234448	0.83[EUR][1000 genomes]
rs11234450	0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap]
rs11234453	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11234460	0.91[CHD][hapmap];0.94[GIH][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes]
rs11234461	0.91[CHD][hapmap];0.94[GIH][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes]
rs11234465	1.00[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11234467	0.81[JPT][hapmap]
rs12222608	1.00[CEU][hapmap]
rs12274739	1.00[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs12286210	0.82[ASN][1000 genomes]
rs12286312	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs12360932	0.91[CHD][hapmap];0.94[GIH][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12362209	0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363602	0.84[CHB][hapmap]
rs12363624	0.91[CHD][hapmap];0.94[GIH][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes]
rs12790645	0.81[CHD][hapmap]
rs12805520	0.81[CHD][hapmap]
rs1445508	0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs1445509	0.87[ASN][1000 genomes]
rs17148564	0.97[ASN][1000 genomes]
rs17148574	0.81[JPT][hapmap]
rs17209127	0.94[GIH][hapmap]
rs17209169	0.85[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17811120	0.86[GIH][hapmap]
rs17817402	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs17817444	0.81[JPT][hapmap]
rs2304343	0.88[GIH][hapmap]
rs56996745	0.87[ASN][1000 genomes]
rs57015267	0.88[AFR][1000 genomes]
rs7121906	0.87[ASN][1000 genomes]
rs725459	0.91[CHD][hapmap];0.81[JPT][hapmap]
rs7926846	1.00[CHD][hapmap];0.81[JPT][hapmap]
rs7934759	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1047147	chr11:85459235-85594800	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv541114	chr11:85459235-85594800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
11	nsv898051	chr11:85554057-85620823	Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
12	nsv898052	chr11:85579304-85620823	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv898053	chr11:85579304-85634425	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85579200-85585400	Weak transcription	NHDF-Ad	bronchial
2	chr11:85579800-85585000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:85581400-85585400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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