Variant report

Variant	rs17817402
Chromosome Location	chr11:85603826-85603827
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85592798..85595721-chr11:85602697..85605651,2	MCF-7	breast:
2	chr11:85601873..85604170-chr11:85607047..85608571,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10501599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10501601	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10898422	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11234437	1.00[JPT][hapmap]
rs11234450	1.00[JPT][hapmap]
rs11234455	0.89[JPT][hapmap]
rs11234460	0.90[JPT][hapmap]
rs11234461	0.90[JPT][hapmap]
rs11234465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11821654	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs12274739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274987	0.82[CHB][hapmap]
rs12283410	0.82[CHB][hapmap]
rs12286210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360932	0.90[JPT][hapmap]
rs12362209	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12363602	0.89[JPT][hapmap]
rs12363624	0.90[JPT][hapmap]
rs12787412	1.00[CHB][hapmap]
rs12790645	0.82[CHB][hapmap]
rs12794211	1.00[CHB][hapmap]
rs12795381	1.00[CHB][hapmap]
rs12795833	1.00[CHB][hapmap]
rs12798229	0.82[ASN][1000 genomes]
rs12802064	0.82[ASN][1000 genomes]
rs12802399	1.00[CHB][hapmap]
rs12805520	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs1445508	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1445509	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17148564	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17148574	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17148585	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs17148704	1.00[CHB][hapmap]
rs17209169	1.00[JPT][hapmap]
rs17744745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17745024	1.00[CHB][hapmap]
rs17817444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17817648	1.00[CHB][hapmap]
rs17817931	1.00[CHB][hapmap]
rs17817992	1.00[CHB][hapmap]
rs3213934	0.82[CHB][hapmap]
rs34609418	0.82[ASN][1000 genomes]
rs56996745	0.94[ASN][1000 genomes]
rs7106460	0.94[CEU][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes]
rs7106577	0.94[CEU][hapmap]
rs7107303	0.82[CHB][hapmap]
rs7107455	0.82[CHB][hapmap]
rs7108491	0.83[EUR][1000 genomes]
rs7118279	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs7121906	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs725459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7926846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs7934759	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7936092	0.90[JPT][hapmap]
rs7949837	0.83[EUR][1000 genomes]
rs895257	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv898051	chr11:85554057-85620823	Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv898052	chr11:85579304-85620823	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv898053	chr11:85579304-85634425	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85601000-85604200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:85601200-85604200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:85601400-85604000	Weak transcription	HepG2	liver
4	chr11:85601400-85604800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:85601800-85604400	Weak transcription	A549	lung
6	chr11:85602400-85604200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:85602800-85604200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:85603400-85604400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:85603400-85604400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:85603400-85604400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:85603800-85604600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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