Variant report

Variant	rs12274987
Chromosome Location	chr11:85626738-85626739
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10501599	0.82[CHB][hapmap]
rs10501601	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs11234465	0.82[CHB][hapmap]
rs11234467	0.82[CHB][hapmap]
rs11234479	0.81[ASN][1000 genomes]
rs11234483	0.81[ASN][1000 genomes]
rs11821654	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12274739	0.82[CHB][hapmap]
rs12283410	1.00[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.81[ASN][1000 genomes]
rs12286312	0.82[CHB][hapmap]
rs12290316	0.81[ASN][1000 genomes]
rs12787412	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs12787418	0.83[EUR][1000 genomes]
rs12787556	0.83[EUR][1000 genomes]
rs12787654	0.81[EUR][1000 genomes]
rs12788680	0.82[EUR][1000 genomes]
rs12790645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12794211	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs12795381	0.92[CEU][hapmap]
rs12795833	0.93[CEU][hapmap]
rs12798065	0.81[EUR][1000 genomes]
rs12798229	0.89[EUR][1000 genomes]
rs12802064	0.89[EUR][1000 genomes]
rs12802399	0.91[CEU][hapmap]
rs12805520	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs1445508	0.82[CHB][hapmap]
rs17148564	1.00[JPT][hapmap]
rs17148574	0.82[CHB][hapmap]
rs17148585	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17148704	0.82[CHB][hapmap]
rs17745024	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs17745409	0.82[CHB][hapmap]
rs17817402	0.82[CHB][hapmap]
rs17817444	0.82[CHB][hapmap]
rs17817648	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs17817931	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs17817992	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs3213934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34003294	0.83[EUR][1000 genomes]
rs34609418	0.89[EUR][1000 genomes]
rs34631477	0.83[EUR][1000 genomes]
rs35519080	0.83[EUR][1000 genomes]
rs55932210	0.83[EUR][1000 genomes]
rs56191920	0.83[EUR][1000 genomes]
rs66953026	0.81[ASN][1000 genomes]
rs7107303	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7107455	1.00[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.81[ASN][1000 genomes]
rs7108491	0.90[ASN][1000 genomes]
rs7118279	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs71465608	0.83[EUR][1000 genomes]
rs725459	0.82[CHB][hapmap]
rs7926846	0.82[CHB][hapmap]
rs7934759	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs7949837	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv898053	chr11:85579304-85634425	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85615800-85630200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links