Variant report

Variant	rs17148564
Chromosome Location	chr11:85602340-85602341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85601873..85604170-chr11:85607047..85608571,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10501599	1.00[JPT][hapmap]
rs10501601	1.00[JPT][hapmap]
rs10898422	0.97[ASN][1000 genomes]
rs11234437	1.00[JPT][hapmap]
rs11234450	1.00[JPT][hapmap]
rs11234453	0.88[ASN][1000 genomes]
rs11234465	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11234467	1.00[JPT][hapmap]
rs11821654	1.00[JPT][hapmap]
rs12274739	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12274987	1.00[JPT][hapmap]
rs12286210	0.84[ASN][1000 genomes]
rs12286312	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12362209	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12790645	1.00[JPT][hapmap]
rs12795381	1.00[CHB][hapmap]
rs12805520	1.00[JPT][hapmap]
rs1445508	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1445509	0.90[ASN][1000 genomes]
rs17148574	1.00[JPT][hapmap]
rs17148585	1.00[JPT][hapmap]
rs17209169	1.00[JPT][hapmap]
rs17817402	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17817444	1.00[JPT][hapmap]
rs3213934	1.00[JPT][hapmap]
rs56996745	0.90[ASN][1000 genomes]
rs7118279	1.00[JPT][hapmap]
rs7121906	0.90[ASN][1000 genomes]
rs725459	1.00[JPT][hapmap]
rs7926846	1.00[JPT][hapmap]
rs7934759	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv898051	chr11:85554057-85620823	Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv898052	chr11:85579304-85620823	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv898053	chr11:85579304-85634425	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85600200-85603400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr11:85600600-85602400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr11:85601000-85604200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:85601200-85604200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:85601400-85604000	Weak transcription	HepG2	liver
6	chr11:85601400-85604800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:85601600-85602400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:85601800-85603000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:85601800-85604400	Weak transcription	A549	lung
10	chr11:85602200-85602400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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