Variant report

Variant	rs36103605
Chromosome Location	chr5:14589686-14589687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14589229..14592694-chr5:14592750..14596191,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13172589	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149196	0.91[EUR][1000 genomes]
rs149197	0.93[EUR][1000 genomes]
rs152621	0.93[ASN][1000 genomes]
rs152717	0.85[EUR][1000 genomes]
rs152765	0.93[ASN][1000 genomes]
rs153819	0.91[EUR][1000 genomes]
rs153823	0.90[EUR][1000 genomes]
rs153824	0.91[EUR][1000 genomes]
rs171652	0.88[EUR][1000 genomes]
rs2455395	0.91[EUR][1000 genomes]
rs25958	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs25959	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs25960	0.95[ASN][1000 genomes]
rs26172	0.90[ASN][1000 genomes]
rs26177	0.98[ASN][1000 genomes]
rs26179	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs27354	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs31971	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs31972	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs31973	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs31974	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs31975	0.95[ASN][1000 genomes]
rs31976	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs457897	0.95[EUR][1000 genomes]
rs468184	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv1837510	chr5:14581556-14591004	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14583200-14594400	Weak transcription	Adipose Nuclei	Adipose
2	chr5:14583400-14591600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:14583400-14593600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:14585000-14590200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:14585000-14590400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:14585200-14590800	Weak transcription	Hela-S3	cervix
7	chr5:14585400-14590600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr5:14585400-14593000	Weak transcription	Fetal Brain Female	brain
9	chr5:14585800-14590400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:14585800-14605000	Weak transcription	Fetal Intestine Small	intestine
11	chr5:14586000-14590600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr5:14586000-14602600	Weak transcription	Fetal Intestine Large	intestine
13	chr5:14587000-14593000	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr5:14587000-14594800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:14587200-14589800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr5:14587400-14592600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:14587800-14590000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr5:14587800-14594600	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr5:14588000-14590000	Enhancers	Stomach Mucosa	stomach
20	chr5:14588000-14590000	Enhancers	GM12878-XiMat	blood
21	chr5:14588200-14589800	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr5:14588200-14592000	Enhancers	Pancreas	Pancrea
23	chr5:14588400-14590000	Enhancers	Duodenum Mucosa	Duodenum
24	chr5:14588600-14593800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:14588800-14595000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr5:14588800-14595200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr5:14589000-14590800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr5:14589000-14594600	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:14589200-14590000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr5:14589200-14591600	Weak transcription	Colonic Mucosa	Colon
31	chr5:14589200-14593000	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:14589400-14589800	Enhancers	Lung	lung
33	chr5:14589400-14590400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:14589400-14590600	Weak transcription	Small Intestine	intestine
35	chr5:14589400-14593200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr5:14589400-14594400	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr5:14589600-14589800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr5:14589600-14590600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr5:14589600-14590600	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr5:14589600-14590600	Weak transcription	Spleen	Spleen
41	chr5:14589600-14591400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr5:14589600-14592800	Weak transcription	Placenta	Placenta
43	chr5:14589600-14596800	Weak transcription	Esophagus	oesophagus

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