Variant report

Variant	rs153823
Chromosome Location	chr5:14626474-14626475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13172589	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs149196	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs149197	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs152717	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs153819	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs153824	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs153829	1.00[YRI][hapmap]
rs16903642	1.00[YRI][hapmap]
rs16903653	1.00[YRI][hapmap]
rs171652	0.95[EUR][1000 genomes]
rs2455395	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs25958	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs25959	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs25961	1.00[CEU][hapmap]
rs26179	0.91[EUR][1000 genomes]
rs27354	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs31971	0.93[EUR][1000 genomes]
rs31972	0.90[EUR][1000 genomes]
rs31973	0.84[EUR][1000 genomes]
rs31974	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs31976	0.91[EUR][1000 genomes]
rs36103605	0.90[EUR][1000 genomes]
rs457897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs468184	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6879028	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14623000-14630200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:14625000-14627400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:14626200-14627400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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