Variant report

Variant	rs36123010
Chromosome Location	chr12:105182629-105182630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55978406	1.00[AFR][1000 genomes]
rs56410163	1.00[AFR][1000 genomes]
rs73183154	1.00[AFR][1000 genomes]
rs73191772	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899496	chr12:105152391-105199038	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899497	chr12:105155291-105247010	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105178000-105186400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr12:105178800-105184000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:105178800-105184000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:105178800-105184000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr12:105178800-105184200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:105178800-105186800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:105179000-105184200	Weak transcription	Fetal Heart	heart
8	chr12:105179000-105186000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:105179600-105186400	Weak transcription	Ovary	ovary
10	chr12:105182200-105183000	Enhancers	K562	blood
11	chr12:105182200-105183200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:105182200-105186200	Weak transcription	HMEC	breast
13	chr12:105182400-105182800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr12:105182400-105182800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr12:105182400-105182800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr12:105182400-105182800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr12:105182400-105183000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:105182400-105183000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr12:105182400-105183000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr12:105182400-105183000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:105182400-105183200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr12:105182400-105183400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr12:105182600-105182800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr12:105182600-105182800	Enhancers	Esophagus	oesophagus
25	chr12:105182600-105182800	Enhancers	Right Atrium	heart
26	chr12:105182600-105182800	Enhancers	Spleen	Spleen
27	chr12:105182600-105183000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr12:105182600-105183000	Enhancers	H9 Cell Line	embryonic stem cell
29	chr12:105182600-105183000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr12:105182600-105183000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr12:105182600-105183000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr12:105182600-105183000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr12:105182600-105183000	Enhancers	Adipose Nuclei	Adipose
34	chr12:105182600-105183000	Enhancers	Brain Anterior Caudate	brain
35	chr12:105182600-105183000	Enhancers	Brain Cingulate Gyrus	brain
36	chr12:105182600-105183000	Enhancers	Brain Germinal Matrix	brain
37	chr12:105182600-105183000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr12:105182600-105183000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr12:105182600-105183000	Enhancers	Duodenum Mucosa	Duodenum
40	chr12:105182600-105183000	Enhancers	Left Ventricle	heart
41	chr12:105182600-105183000	Enhancers	Lung	lung
42	chr12:105182600-105183000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr12:105182600-105183000	Enhancers	Thymus	Thymus
44	chr12:105182600-105183000	Enhancers	A549	lung
45	chr12:105182600-105183000	Enhancers	HepG2	liver
46	chr12:105182600-105183000	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr12:105182600-105183200	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr12:105182600-105183200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr12:105182600-105183200	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr12:105182600-105183200	Enhancers	Cortex derived primary cultured neurospheres	brain

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