Variant report

Variant	rs55978406
Chromosome Location	chr12:105267031-105267032
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs36123010	1.00[AFR][1000 genomes]
rs56410163	1.00[AFR][1000 genomes]
rs73183154	1.00[AFR][1000 genomes]
rs73191772	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105238400-105280000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr12:105248000-105269000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:105259400-105277800	Weak transcription	Pancreas	Pancrea
4	chr12:105260000-105267200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:105260000-105267400	Weak transcription	NHDF-Ad	bronchial
6	chr12:105260800-105280200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:105261400-105278000	Weak transcription	Gastric	stomach
8	chr12:105266200-105268800	Weak transcription	Liver	Liver
9	chr12:105266800-105267400	Enhancers	Dnd41	blood
10	chr12:105267000-105267400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr12:105267000-105267800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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