Variant report

Variant	rs36132266
Chromosome Location	chr14:69266023-69266024
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68657329..68659380-chr14:69264255..69267196,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10142466	0.88[AMR][1000 genomes]
rs11626883	0.83[AMR][1000 genomes]
rs17835641	0.82[AMR][1000 genomes]
rs17835647	0.82[AMR][1000 genomes]
rs2236262	0.91[AMR][1000 genomes]
rs34489253	0.91[AMR][1000 genomes]
rs4899257	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4902651	0.88[AMR][1000 genomes]
rs60339744	0.80[EUR][1000 genomes]
rs8022092	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36132266	ZFP36L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69263200-69273000	Weak transcription	Ovary	ovary
2	chr14:69263200-69273200	Weak transcription	HSMM	muscle
3	chr14:69263400-69267000	Weak transcription	HMEC	breast
4	chr14:69263600-69266800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:69263600-69266800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:69263600-69266800	Weak transcription	Dnd41	blood
7	chr14:69263600-69267000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:69263600-69267000	Weak transcription	Osteobl	bone
9	chr14:69263600-69273200	Weak transcription	NH-A	brain
10	chr14:69263800-69266600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr14:69263800-69266800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:69264000-69266600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr14:69264000-69267200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr14:69264000-69271600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:69264200-69266600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:69264200-69267000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:69264200-69267000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:69264200-69267000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:69264200-69267000	Weak transcription	A549	lung
20	chr14:69264200-69267200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:69264200-69273200	Weak transcription	Right Atrium	heart
22	chr14:69264200-69273600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:69264200-69277800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:69264400-69267000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr14:69264400-69267400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:69264400-69272600	Weak transcription	HSMMtube	muscle
27	chr14:69264400-69281200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:69264600-69266800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr14:69264600-69267000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:69264600-69267000	Weak transcription	NHEK	skin
31	chr14:69264600-69267200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr14:69264800-69272200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:69264800-69273200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr14:69265000-69266800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr14:69265000-69266800	Weak transcription	Hela-S3	cervix
36	chr14:69265400-69267400	ZNF genes & repeats	GM12878-XiMat	blood
37	chr14:69265600-69267800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr14:69265800-69266600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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