Variant report

Variant	rs11626883
Chromosome Location	chr14:69279460-69279461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68659810..68661371-chr14:69279352..69280927,2	MCF-7	breast:
2	chr14:68713706..68716273-chr14:69277811..69279687,2	MCF-7	breast:
3	chr14:68717006..68718787-chr14:69279079..69280637,2	MCF-7	breast:
4	chr14:68281799..68283373-chr14:69277019..69279798,2	MCF-7	breast:
5	chr14:68705377..68708933-chr14:69277914..69280943,3	MCF-7	breast:
6	chr14:68734764..68737197-chr14:69278376..69281274,2	MCF-7	breast:
7	chr14:68406192..68411564-chr14:69279428..69286293,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072121	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10136476	0.81[EUR][1000 genomes]
rs10139345	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10142466	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143060	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10143220	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10143529	0.81[AFR][1000 genomes]
rs10873217	0.84[EUR][1000 genomes]
rs11158767	0.85[EUR][1000 genomes]
rs11625403	0.85[EUR][1000 genomes]
rs12889006	0.91[ASN][1000 genomes]
rs1465788	0.95[ASN][1000 genomes]
rs1595260	0.95[ASN][1000 genomes]
rs1595261	0.90[ASN][1000 genomes]
rs168961	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106304	0.90[ASN][1000 genomes]
rs17835641	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17835647	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836984	0.93[ASN][1000 genomes]
rs194746	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs194747	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs194748	0.93[ASN][1000 genomes]
rs194749	0.98[ASN][1000 genomes]
rs194751	0.90[ASN][1000 genomes]
rs194778	0.93[ASN][1000 genomes]
rs2236262	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2236263	0.90[ASN][1000 genomes]
rs34489253	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36132266	0.83[AMR][1000 genomes]
rs367677	0.90[ASN][1000 genomes]
rs3742887	0.90[ASN][1000 genomes]
rs3825568	0.91[ASN][1000 genomes]
rs4288924	0.84[EUR][1000 genomes]
rs4899258	0.98[ASN][1000 genomes]
rs4899259	0.93[ASN][1000 genomes]
rs4899263	0.88[EUR][1000 genomes]
rs4899264	0.84[EUR][1000 genomes]
rs4902651	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902653	0.85[EUR][1000 genomes]
rs4902654	0.85[EUR][1000 genomes]
rs6573857	0.94[ASN][1000 genomes]
rs7142145	0.85[EUR][1000 genomes]
rs7142589	0.85[EUR][1000 genomes]
rs7149042	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7149271	0.98[ASN][1000 genomes]
rs7156516	0.93[ASN][1000 genomes]
rs8011558	0.90[ASN][1000 genomes]
rs8022092	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs927292	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11626883	ZFP36L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69264400-69281200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:69271600-69281200	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69271600-69281200	Enhancers	Fetal Stomach	stomach
4	chr14:69274000-69281000	Weak transcription	Aorta	Aorta
5	chr14:69274000-69281000	Weak transcription	Fetal Brain Male	brain
6	chr14:69274200-69279600	Weak transcription	Thymus	Thymus
7	chr14:69274200-69280000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:69274200-69280000	Weak transcription	Brain Substantia Nigra	brain
9	chr14:69274200-69280000	Weak transcription	Psoas Muscle	Psoas
10	chr14:69274200-69280800	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:69274200-69281000	Weak transcription	Brain Angular Gyrus	brain
12	chr14:69274400-69279600	Weak transcription	Brain Anterior Caudate	brain
13	chr14:69274400-69280800	Weak transcription	K562	blood
14	chr14:69274400-69281000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:69274400-69281000	Weak transcription	Osteobl	bone
16	chr14:69274600-69280000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:69274600-69280000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:69274600-69280400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:69274600-69280400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:69274600-69280400	Weak transcription	NHDF-Ad	bronchial
21	chr14:69274800-69280000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr14:69274800-69280000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr14:69274800-69280000	Weak transcription	HepG2	liver
24	chr14:69274800-69280200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr14:69274800-69280800	Weak transcription	HSMM	muscle
26	chr14:69275000-69280000	Weak transcription	Left Ventricle	heart
27	chr14:69275200-69279800	Weak transcription	Small Intestine	intestine
28	chr14:69275200-69280000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr14:69275200-69280000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:69275200-69280000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:69275400-69279800	Weak transcription	Liver	Liver
32	chr14:69275600-69279800	Weak transcription	Colonic Mucosa	Colon
33	chr14:69275600-69280200	Weak transcription	HSMMtube	muscle
34	chr14:69275800-69279800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr14:69275800-69280000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:69275800-69280000	Weak transcription	Stomach Mucosa	stomach
37	chr14:69275800-69281000	Weak transcription	Gastric	stomach
38	chr14:69276400-69280000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr14:69276400-69280000	Weak transcription	Fetal Kidney	kidney
40	chr14:69276400-69280000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr14:69276400-69280200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr14:69276400-69280400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:69276400-69280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:69276600-69279800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:69276600-69279800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr14:69276600-69279800	Weak transcription	Spleen	Spleen
47	chr14:69276600-69280000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr14:69276600-69280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr14:69276600-69280400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:69276600-69280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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