Variant report

Variant	rs7149042
Chromosome Location	chr14:69291666-69291667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69291332..69292211-chr14:69310396..69311019,5	MCF-7	breast:
2	chr14:68661795..68663594-chr14:69290937..69292975,2	MCF-7	breast:
3	chr14:69281086..69282985-chr14:69289138..69291882,2	K562	blood:
4	chr14:68404625..68407079-chr14:69290419..69292387,2	MCF-7	breast:
5	chr14:69291218..69291978-chr14:69573908..69574423,2	MCF-7	breast:
6	chr14:69284387..69286906-chr14:69288096..69291991,4	K562	blood:
7	chr14:69127719..69129737-chr14:69289553..69291881,2	MCF-7	breast:
8	chr14:69283985..69288405-chr14:69289661..69293345,5	K562	blood:

No data

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10136476	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10139345	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10142466	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10143060	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143220	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143529	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10873217	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158767	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11625403	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626883	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1274952	0.88[ASN][1000 genomes]
rs1274953	0.93[ASN][1000 genomes]
rs1274954	0.93[ASN][1000 genomes]
rs1295793	0.90[ASN][1000 genomes]
rs168961	0.84[EUR][1000 genomes]
rs1742893	0.94[ASN][1000 genomes]
rs17835641	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17835647	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs183171	0.94[ASN][1000 genomes]
rs194714	0.94[ASN][1000 genomes]
rs194715	0.94[ASN][1000 genomes]
rs194717	0.94[ASN][1000 genomes]
rs194730	0.89[ASN][1000 genomes]
rs194733	0.90[ASN][1000 genomes]
rs194734	0.90[ASN][1000 genomes]
rs194739	0.90[ASN][1000 genomes]
rs194741	0.92[ASN][1000 genomes]
rs194746	0.84[EUR][1000 genomes]
rs194747	0.84[EUR][1000 genomes]
rs34489253	0.82[EUR][1000 genomes]
rs4288924	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4899263	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4899264	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4902651	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4902653	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4902654	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7142145	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7142589	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs750658	0.93[ASN][1000 genomes]
rs8022092	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
4	nsv902071	chr14:69288432-69328594	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv902072	chr14:69288432-69329149	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv902073	chr14:69288432-69331065	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7149042	ZFP36L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69284000-69300200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:69284200-69305600	Weak transcription	HSMMtube	muscle
3	chr14:69285200-69291800	Enhancers	Fetal Muscle Leg	muscle
4	chr14:69286000-69291800	Enhancers	Fetal Muscle Trunk	muscle
5	chr14:69286800-69291800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:69287000-69292000	Enhancers	Primary B cells from peripheral blood	blood
7	chr14:69287200-69302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:69288200-69304400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:69289400-69292200	Flanking Active TSS	HepG2	liver
10	chr14:69289800-69293000	Enhancers	Fetal Intestine Small	intestine
11	chr14:69290200-69291800	Enhancers	GM12878-XiMat	blood
12	chr14:69290200-69302200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:69290200-69302200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:69290200-69307200	Weak transcription	HMEC	breast
15	chr14:69290800-69291800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr14:69290800-69291800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:69290800-69291800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:69290800-69291800	Enhancers	Ovary	ovary
19	chr14:69291000-69291800	Enhancers	Primary B cells from cord blood	blood
20	chr14:69291000-69291800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr14:69291000-69291800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr14:69291000-69291800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr14:69291000-69291800	Enhancers	Fetal Thymus	thymus
24	chr14:69291000-69291800	Enhancers	Spleen	Spleen
25	chr14:69291000-69292000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr14:69291200-69291800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:69291200-69291800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:69291200-69291800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr14:69291200-69291800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:69291200-69291800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr14:69291200-69291800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:69291200-69291800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:69291200-69291800	Enhancers	Colon Smooth Muscle	Colon
34	chr14:69291200-69291800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr14:69291200-69291800	Enhancers	Placenta	Placenta
36	chr14:69291200-69291800	Enhancers	Gastric	stomach
37	chr14:69291200-69291800	Enhancers	Lung	lung
38	chr14:69291200-69291800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr14:69291200-69291800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr14:69291200-69291800	Flanking Active TSS	Hela-S3	cervix
41	chr14:69291200-69292400	Flanking Active TSS	Liver	Liver
42	chr14:69291200-69293200	Enhancers	Fetal Intestine Large	intestine
43	chr14:69291200-69304800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr14:69291400-69291800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:69291400-69291800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:69291400-69291800	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr14:69291400-69291800	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr14:69291400-69291800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:69291400-69291800	Active TSS	Brain Angular Gyrus	brain
50	chr14:69291400-69291800	Flanking Active TSS	Brain Anterior Caudate	brain

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