Variant report

Variant	rs194717
Chromosome Location	chr14:69293128-69293129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69281619..69283522-chr14:69291713..69294736,3	MCF-7	breast:
2	chr14:69283985..69288405-chr14:69289661..69293345,5	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10136476	0.85[ASN][1000 genomes]
rs10139345	0.97[ASN][1000 genomes]
rs10143060	0.94[ASN][1000 genomes]
rs10143220	0.94[ASN][1000 genomes]
rs10143529	0.87[ASN][1000 genomes]
rs10873217	0.90[ASN][1000 genomes]
rs11158767	0.93[ASN][1000 genomes]
rs11625403	0.93[ASN][1000 genomes]
rs1274952	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1274953	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1274954	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1295793	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs168962	0.80[EUR][1000 genomes]
rs1742893	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183171	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194714	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194715	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194730	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs194733	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194734	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194739	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194741	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194748	0.81[EUR][1000 genomes]
rs194749	0.81[EUR][1000 genomes]
rs402223	0.82[EUR][1000 genomes]
rs4288924	0.89[ASN][1000 genomes]
rs4899259	0.83[EUR][1000 genomes]
rs4902654	0.88[ASN][1000 genomes]
rs7142145	0.93[ASN][1000 genomes]
rs7142589	0.93[ASN][1000 genomes]
rs7149042	0.94[ASN][1000 genomes]
rs7156516	0.83[EUR][1000 genomes]
rs750658	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
4	nsv902071	chr14:69288432-69328594	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv902072	chr14:69288432-69329149	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv902073	chr14:69288432-69331065	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs194717	ZFP36L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69284000-69300200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:69284200-69305600	Weak transcription	HSMMtube	muscle
3	chr14:69287200-69302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:69288200-69304400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:69290200-69302200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:69290200-69302200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:69290200-69307200	Weak transcription	HMEC	breast
8	chr14:69291200-69293200	Enhancers	Fetal Intestine Large	intestine
9	chr14:69291200-69304800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:69291600-69302200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:69291600-69302600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:69291800-69293200	Weak transcription	GM12878-XiMat	blood
13	chr14:69291800-69293600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:69291800-69304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:69292000-69300600	Weak transcription	HSMM	muscle
16	chr14:69292000-69301200	Weak transcription	NH-A	brain
17	chr14:69292400-69293400	Enhancers	Liver	Liver

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