Variant report

Variant	rs7156516
Chromosome Location	chr14:69280049-69280050
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68659810..68661371-chr14:69279352..69280927,2	MCF-7	breast:
2	chr14:68934022..68936494-chr14:69279866..69281612,2	K562	blood:
3	chr14:68717006..68718787-chr14:69279079..69280637,2	MCF-7	breast:
4	chr14:68409426..68412262-chr14:69280020..69282868,2	MCF-7	breast:
5	chr14:68658060..68659603-chr14:69279653..69281747,2	MCF-7	breast:
6	chr14:68609991..68612093-chr14:69279827..69282795,2	MCF-7	breast:
7	chr14:69270505..69278428-chr14:69279681..69285729,13	K562	blood:
8	chr14:68705377..68708933-chr14:69277914..69280943,3	MCF-7	breast:
9	chr14:68984645..68986314-chr14:69279663..69281210,2	MCF-7	breast:
10	chr14:68734764..68737197-chr14:69278376..69281274,2	MCF-7	breast:
11	chr14:68406192..68411564-chr14:69279428..69286293,11	MCF-7	breast:

No data

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10142466	0.93[ASN][1000 genomes]
rs11626883	0.93[ASN][1000 genomes]
rs1274952	0.83[EUR][1000 genomes]
rs1274953	0.83[EUR][1000 genomes]
rs1274954	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12889006	0.84[ASN][1000 genomes]
rs1295793	0.83[EUR][1000 genomes]
rs1465788	0.92[ASN][1000 genomes]
rs1595260	0.92[ASN][1000 genomes]
rs1595261	0.97[ASN][1000 genomes]
rs168962	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17106304	0.97[ASN][1000 genomes]
rs1742893	0.83[EUR][1000 genomes]
rs17835641	0.93[ASN][1000 genomes]
rs17835647	0.93[ASN][1000 genomes]
rs183171	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1836984	0.90[ASN][1000 genomes]
rs194714	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs194715	0.83[EUR][1000 genomes]
rs194717	0.83[EUR][1000 genomes]
rs194730	0.82[EUR][1000 genomes]
rs194733	0.82[EUR][1000 genomes]
rs194734	0.82[EUR][1000 genomes]
rs194739	0.82[EUR][1000 genomes]
rs194741	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs194748	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194749	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs194751	0.97[ASN][1000 genomes]
rs194778	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2236262	0.85[ASN][1000 genomes]
rs2236263	0.97[ASN][1000 genomes]
rs34489253	0.90[ASN][1000 genomes]
rs367677	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742887	0.97[ASN][1000 genomes]
rs3825568	0.85[ASN][1000 genomes]
rs402223	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4899258	0.95[ASN][1000 genomes]
rs4899259	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902651	0.93[ASN][1000 genomes]
rs6573857	0.91[ASN][1000 genomes]
rs7149271	0.95[ASN][1000 genomes]
rs750658	0.82[EUR][1000 genomes]
rs8011558	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8022092	0.90[ASN][1000 genomes]
rs927292	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7156516	ZFP36L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69264400-69281200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:69271600-69281200	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69271600-69281200	Enhancers	Fetal Stomach	stomach
4	chr14:69274000-69281000	Weak transcription	Aorta	Aorta
5	chr14:69274000-69281000	Weak transcription	Fetal Brain Male	brain
6	chr14:69274200-69280800	Enhancers	Primary B cells from peripheral blood	blood
7	chr14:69274200-69281000	Weak transcription	Brain Angular Gyrus	brain
8	chr14:69274400-69280800	Weak transcription	K562	blood
9	chr14:69274400-69281000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:69274400-69281000	Weak transcription	Osteobl	bone
11	chr14:69274600-69280400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:69274600-69280400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr14:69274600-69280400	Weak transcription	NHDF-Ad	bronchial
14	chr14:69274800-69280200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr14:69274800-69280800	Weak transcription	HSMM	muscle
16	chr14:69275600-69280200	Weak transcription	HSMMtube	muscle
17	chr14:69275800-69281000	Weak transcription	Gastric	stomach
18	chr14:69276400-69280200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:69276400-69280400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:69276400-69280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:69276600-69280400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:69276600-69280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:69276600-69280800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:69276600-69286200	Weak transcription	Ovary	ovary
25	chr14:69277000-69280400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr14:69277200-69280200	Weak transcription	Right Ventricle	heart
27	chr14:69277600-69280200	Weak transcription	A549	lung
28	chr14:69277600-69280800	Enhancers	Primary T cells fromperipheralblood	blood
29	chr14:69277800-69280200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr14:69277800-69280800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr14:69278200-69280200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:69278200-69280400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:69278200-69280600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr14:69278400-69280800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr14:69278800-69280400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr14:69278800-69280600	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr14:69278800-69280800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr14:69278800-69281000	Enhancers	Fetal Lung	lung
39	chr14:69279000-69280200	Enhancers	Primary T cells from cord blood	blood
40	chr14:69279000-69280200	Enhancers	Stomach Smooth Muscle	stomach
41	chr14:69279000-69280800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:69279000-69281000	Enhancers	Fetal Muscle Trunk	muscle
43	chr14:69279200-69280800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:69279200-69280800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:69279200-69281000	Genic enhancers	Fetal Intestine Small	intestine
46	chr14:69279200-69281000	Enhancers	Fetal Thymus	thymus
47	chr14:69279200-69282800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr14:69279200-69283000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:69279400-69280600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr14:69279400-69280600	Enhancers	Brain Hippocampus Middle	brain

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