Variant report

Variant	rs36185332
Chromosome Location	chr7:58022216-58022217
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1052306	0.94[EUR][1000 genomes]
rs11071640	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11071644	0.88[EUR][1000 genomes]
rs11555593	0.96[EUR][1000 genomes]
rs11555596	0.94[EUR][1000 genomes]
rs11629559	0.96[EUR][1000 genomes]
rs11629598	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11629645	0.81[EUR][1000 genomes]
rs11629741	0.96[EUR][1000 genomes]
rs11629851	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11629900	0.96[EUR][1000 genomes]
rs11631273	0.96[EUR][1000 genomes]
rs11632560	0.87[EUR][1000 genomes]
rs11634077	0.83[EUR][1000 genomes]
rs11634306	0.83[EUR][1000 genomes]
rs11635880	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11636652	0.96[EUR][1000 genomes]
rs11637606	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11637967	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11638455	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11639286	0.87[EUR][1000 genomes]
rs12185103	0.98[EUR][1000 genomes]
rs12898715	0.85[EUR][1000 genomes]
rs12898859	0.85[EUR][1000 genomes]
rs12901036	0.83[EUR][1000 genomes]
rs12901055	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12901735	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12902859	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12905103	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12905264	0.92[EUR][1000 genomes]
rs12905403	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12907534	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12907567	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12912477	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12913358	0.81[EUR][1000 genomes]
rs12915283	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12915585	0.96[EUR][1000 genomes]
rs12916410	0.89[EUR][1000 genomes]
rs17238096	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17271291	0.90[EUR][1000 genomes]
rs17303887	0.96[EUR][1000 genomes]
rs17303894	0.94[EUR][1000 genomes]
rs17303915	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2303405	0.96[EUR][1000 genomes]
rs34017665	0.85[EUR][1000 genomes]
rs34042779	0.92[EUR][1000 genomes]
rs34088392	0.87[EUR][1000 genomes]
rs34173668	0.81[EUR][1000 genomes]
rs34234705	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34257602	0.90[EUR][1000 genomes]
rs34282385	0.87[EUR][1000 genomes]
rs34424197	0.90[EUR][1000 genomes]
rs34435758	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34486946	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34556569	0.90[EUR][1000 genomes]
rs34589937	0.96[EUR][1000 genomes]
rs34646089	0.96[EUR][1000 genomes]
rs34796280	0.96[EUR][1000 genomes]
rs34853395	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34933463	0.83[EUR][1000 genomes]
rs34958705	0.87[EUR][1000 genomes]
rs34997975	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35259011	0.90[EUR][1000 genomes]
rs35324423	0.83[EUR][1000 genomes]
rs35523559	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35559361	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35607089	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35633657	0.83[EUR][1000 genomes]
rs35764401	0.94[EUR][1000 genomes]
rs35984535	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36004142	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36056548	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36126734	0.87[EUR][1000 genomes]
rs36175042	0.83[EUR][1000 genomes]
rs4143844	0.81[EUR][1000 genomes]
rs4143845	0.87[EUR][1000 genomes]
rs62006964	0.94[EUR][1000 genomes]
rs62006969	0.83[EUR][1000 genomes]
rs62007448	0.82[EUR][1000 genomes]
rs62007764	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62007768	0.92[EUR][1000 genomes]
rs62007791	0.90[EUR][1000 genomes]
rs62009074	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62009078	0.96[EUR][1000 genomes]
rs62009082	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62009106	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62009109	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71411468	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71411469	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71411471	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs957348	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs978141	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv433384	chr7:57633285-58029051	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv607105	chr7:57923927-58051868	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv607106	chr7:57923927-58054092	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv13519	chr7:57940278-58054218	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv821066	chr7:57940278-58054218	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv607107	chr7:57940293-58051868	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv607108	chr7:57940293-58054092	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv607112	chr7:57992609-58051868	Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3440004	chr7:58019010-58023608	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36185332	VPS13C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:58021800-58026400	Weak transcription	Liver	Liver

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