Variant report

Variant	rs36210421
Chromosome Location	chr7:150644428-150644429
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150628399..150630448-chr7:150642473..150645153,2	MCF-7	breast:
2	chr7:150642265..150645123-chr7:150653775..150655725,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17173664	0.86[EUR][1000 genomes]
rs41307316	0.85[EUR][1000 genomes]
rs41308978	0.85[EUR][1000 genomes]
rs41308993	0.88[EUR][1000 genomes]
rs55642626	0.94[EUR][1000 genomes]
rs73167606	0.83[EUR][1000 genomes]
rs73167607	0.81[EUR][1000 genomes]
rs73167609	0.81[EUR][1000 genomes]
rs73167611	0.81[EUR][1000 genomes]
rs73167612	0.84[EUR][1000 genomes]
rs73167614	0.86[EUR][1000 genomes]
rs73167615	0.86[EUR][1000 genomes]
rs73167623	0.85[EUR][1000 genomes]
rs73167625	0.88[EUR][1000 genomes]
rs73167627	0.88[EUR][1000 genomes]
rs73167633	0.88[EUR][1000 genomes]
rs7792983	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2758140	chr7:150538821-150663697	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759574	chr7:150538821-150663697	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
8	nsv465212	chr7:150598492-150667210	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv609000	chr7:150598492-150667210	Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv465213	chr7:150606288-150667210	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv609001	chr7:150606288-150667210	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
12	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
13	nsv889463	chr7:150640285-150700946	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
14	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
15	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
16	nsv889466	chr7:150642341-150687430	Enhancers Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
17	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
18	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
19	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
20	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150635600-150648000	Weak transcription	Ovary	ovary
2	chr7:150637800-150652400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:150639600-150650800	Weak transcription	Pancreas	Pancrea
4	chr7:150639800-150645000	Weak transcription	Right Atrium	heart
5	chr7:150639800-150649200	Weak transcription	Gastric	stomach
6	chr7:150640400-150646800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:150640600-150648800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr7:150641800-150649800	Weak transcription	Spleen	Spleen
9	chr7:150642000-150645400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:150642000-150650400	Enhancers	Fetal Heart	heart
11	chr7:150642200-150644600	Enhancers	Left Ventricle	heart
12	chr7:150642200-150645200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr7:150642400-150647200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:150642600-150644600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr7:150643000-150650400	Weak transcription	Fetal Kidney	kidney
16	chr7:150643000-150651800	Weak transcription	HSMMtube	muscle
17	chr7:150643200-150645000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:150643200-150645400	Bivalent Enhancer	Fetal Intestine Small	intestine
19	chr7:150643400-150645200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:150643400-150645400	Bivalent Enhancer	Fetal Intestine Large	intestine
21	chr7:150643400-150645400	Bivalent Enhancer	Fetal Stomach	stomach
22	chr7:150643400-150647600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr7:150643400-150652200	Weak transcription	Brain Angular Gyrus	brain
24	chr7:150643600-150644600	Enhancers	Esophagus	oesophagus
25	chr7:150643600-150652000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr7:150643600-150652200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:150643800-150645000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr7:150643800-150646600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:150643800-150648000	Weak transcription	Brain Anterior Caudate	brain
30	chr7:150643800-150650800	Weak transcription	Brain Hippocampus Middle	brain
31	chr7:150644000-150644600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
32	chr7:150644000-150644800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:150644000-150645200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:150644000-150645400	Bivalent Enhancer	Fetal Brain Male	brain
35	chr7:150644000-150647800	Weak transcription	Fetal Brain Female	brain
36	chr7:150644000-150649400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr7:150644000-150649800	Genic enhancers	Stomach Smooth Muscle	stomach
38	chr7:150644200-150644600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr7:150644200-150645000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:150644200-150645000	Weak transcription	K562	blood
41	chr7:150644200-150645400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:150644200-150645600	Weak transcription	Right Ventricle	heart
43	chr7:150644200-150646600	Weak transcription	Colon Smooth Muscle	Colon
44	chr7:150644400-150645000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr7:150644400-150645400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:150644400-150645400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:150644400-150647400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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