Variant report

Variant	rs41308978
Chromosome Location	chr7:150665746-150665747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150661035..150665420-chr7:150665668..150673641,9	MCF-7	breast:
2	chr7:150663758..150666367-chr7:150811636..150813579,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133612	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17173664	0.84[EUR][1000 genomes]
rs36210421	0.85[EUR][1000 genomes]
rs41307316	0.94[EUR][1000 genomes]
rs41308993	0.97[EUR][1000 genomes]
rs41309017	0.81[EUR][1000 genomes]
rs41309026	0.81[EUR][1000 genomes]
rs55642626	0.91[EUR][1000 genomes]
rs73167606	0.86[EUR][1000 genomes]
rs73167607	0.84[EUR][1000 genomes]
rs73167609	0.84[EUR][1000 genomes]
rs73167611	0.84[EUR][1000 genomes]
rs73167612	0.81[EUR][1000 genomes]
rs73167614	0.84[EUR][1000 genomes]
rs73167615	0.84[EUR][1000 genomes]
rs73167623	0.94[EUR][1000 genomes]
rs73167625	0.97[EUR][1000 genomes]
rs73167627	0.97[EUR][1000 genomes]
rs73167633	0.97[EUR][1000 genomes]
rs7792983	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
4	nsv465212	chr7:150598492-150667210	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv609000	chr7:150598492-150667210	Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv465213	chr7:150606288-150667210	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv609001	chr7:150606288-150667210	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
9	nsv889463	chr7:150640285-150700946	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
11	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
12	nsv889466	chr7:150642341-150687430	Enhancers Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
13	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
14	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
15	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
16	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
17	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
18	nsv889468	chr7:150652419-150696111	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
19	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150652800-150666400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:150657200-150669600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:150658000-150665800	Enhancers	Fetal Muscle Leg	muscle
4	chr7:150658200-150670800	Enhancers	Rectal Smooth Muscle	rectum
5	chr7:150658600-150666000	Enhancers	Colon Smooth Muscle	Colon
6	chr7:150658600-150666200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:150658800-150670400	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr7:150660200-150668200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:150660400-150668000	Weak transcription	Brain Substantia Nigra	brain
10	chr7:150660600-150666000	Weak transcription	Fetal Intestine Small	intestine
11	chr7:150660600-150666400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:150660600-150666800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:150661200-150666000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:150661800-150666000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:150661800-150670400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:150662000-150666000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:150662200-150665800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:150662200-150666000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:150662200-150666200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:150662400-150666000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:150662400-150666000	Weak transcription	Right Atrium	heart
22	chr7:150662600-150666000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:150662600-150666400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:150662600-150667400	Weak transcription	Spleen	Spleen
25	chr7:150663000-150665800	Weak transcription	Lung	lung
26	chr7:150663000-150666000	Weak transcription	Brain Anterior Caudate	brain
27	chr7:150663000-150666200	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:150663000-150666600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:150663200-150665800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:150663400-150665800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:150663400-150665800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr7:150663400-150668200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:150664000-150670000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr7:150664400-150665800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr7:150664400-150673600	Enhancers	Fetal Lung	lung
36	chr7:150664600-150674000	Enhancers	Fetal Brain Male	brain
37	chr7:150665200-150666000	Weak transcription	Brain Germinal Matrix	brain
38	chr7:150665200-150666200	Bivalent Enhancer	HSMM	muscle
39	chr7:150665200-150667200	Enhancers	K562	blood
40	chr7:150665200-150671800	Genic enhancers	Fetal Stomach	stomach
41	chr7:150665400-150665800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
42	chr7:150665400-150666200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr7:150665400-150666400	Bivalent Enhancer	Fetal Thymus	thymus
44	chr7:150665400-150667200	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr7:150665400-150667200	Enhancers	HSMMtube	muscle
46	chr7:150665400-150668400	Bivalent Enhancer	Placenta	Placenta
47	chr7:150665400-150671800	Enhancers	Left Ventricle	heart
48	chr7:150665600-150665800	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr7:150665600-150665800	Flanking Active TSS	Fetal Heart	heart
50	chr7:150665600-150667800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links