Variant report

Variant	rs36212
Chromosome Location	chr3:134629849-134629850
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1007557	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs1457554	0.90[JPT][hapmap]
rs1992870	0.86[ASN][1000 genomes]
rs36200	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36201	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36202	0.96[ASN][1000 genomes]
rs36203	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36207	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36214	0.81[ASW][hapmap];0.82[MKK][hapmap]
rs36218	0.87[CEU][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs39705	0.95[ASN][1000 genomes]
rs658459	0.94[ASN][1000 genomes]
rs7651682	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv460859	chr3:134626339-134645710	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134624400-134630000	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:134624600-134634200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:134624800-134631800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:134626200-134631000	Weak transcription	GM12878-XiMat	blood
5	chr3:134627600-134630000	Weak transcription	Brain Germinal Matrix	brain
6	chr3:134627600-134630000	Weak transcription	Fetal Brain Male	brain
7	chr3:134628000-134630600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:134629400-134631600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:134629800-134630600	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:134629800-134630600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:134629800-134631800	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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