Variant report

Variant	rs36214
Chromosome Location	chr3:134629492-134629493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs36212	0.81[ASW][hapmap];0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv460859	chr3:134626339-134645710	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36214	CLDN18	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134624400-134630000	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:134624600-134629800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:134624600-134634200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:134624800-134629800	Weak transcription	Fetal Brain Female	brain
5	chr3:134624800-134631800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:134626200-134631000	Weak transcription	GM12878-XiMat	blood
7	chr3:134627600-134630000	Weak transcription	Brain Germinal Matrix	brain
8	chr3:134627600-134630000	Weak transcription	Fetal Brain Male	brain
9	chr3:134628000-134630600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:134629400-134629600	Enhancers	Brain Anterior Caudate	brain
11	chr3:134629400-134631600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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