Variant report

Variant	rs363231
Chromosome Location	chr10:119032488-119032489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17546033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs17628621	1.00[AFR][1000 genomes]
rs181441	1.00[AFR][1000 genomes]
rs2490629	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532810	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363294	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119017400-119034000	Weak transcription	Gastric	stomach
2	chr10:119020000-119034000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:119020000-119042600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:119020600-119035000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:119020600-119043200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:119020600-119045400	Weak transcription	Fetal Heart	heart
7	chr10:119021400-119043200	Weak transcription	Fetal Intestine Small	intestine
8	chr10:119022600-119042000	Weak transcription	Fetal Intestine Large	intestine
9	chr10:119023800-119043200	Weak transcription	Spleen	Spleen
10	chr10:119026000-119032600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:119027000-119038400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:119027800-119042600	Weak transcription	HepG2	liver
13	chr10:119028800-119042600	Weak transcription	Fetal Kidney	kidney
14	chr10:119029200-119042800	Weak transcription	Primary T cells from cord blood	blood
15	chr10:119029200-119043000	Weak transcription	Fetal Thymus	thymus
16	chr10:119029200-119043200	Weak transcription	Fetal Stomach	stomach
17	chr10:119030000-119040800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:119030600-119032600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:119031200-119032600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:119031200-119033400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:119031200-119042600	Weak transcription	Thymus	Thymus
22	chr10:119031400-119042200	Weak transcription	NH-A	brain
23	chr10:119031600-119032600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:119031600-119034200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:119031600-119041200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:119031600-119042600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:119031600-119043000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:119031600-119043000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:119031600-119043000	Weak transcription	A549	lung
30	chr10:119031800-119032600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:119031800-119032600	Flanking Active TSS	K562	blood
32	chr10:119031800-119043200	Weak transcription	NHEK	skin
33	chr10:119031800-119043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:119032000-119042600	Weak transcription	HMEC	breast
35	chr10:119032000-119044000	Weak transcription	Aorta	Aorta
36	chr10:119032000-119050600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr10:119032400-119034000	Weak transcription	Pancreas	Pancrea
38	chr10:119032400-119042600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:119032400-119043800	Weak transcription	Esophagus	oesophagus
40	chr10:119032400-119051000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links