Variant report

Variant	rs363294
Chromosome Location	chr10:119043554-119043555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119043544..119045471-chr10:119058907..119061479,2	MCF-7	breast:
2	chr10:119038341..119040468-chr10:119041831..119043612,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17546033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs17628621	1.00[AFR][1000 genomes]
rs181441	1.00[AFR][1000 genomes]
rs2490629	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532810	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363231	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948198	chr10:119041819-119045213	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119020600-119045400	Weak transcription	Fetal Heart	heart
2	chr10:119031800-119043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:119032000-119044000	Weak transcription	Aorta	Aorta
4	chr10:119032000-119050600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:119032400-119043800	Weak transcription	Esophagus	oesophagus
6	chr10:119032400-119051000	Weak transcription	Ovary	ovary
7	chr10:119032600-119046200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:119032600-119063200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:119035200-119043800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:119035400-119058000	Weak transcription	Small Intestine	intestine
11	chr10:119035800-119043800	Weak transcription	Lung	lung
12	chr10:119036600-119044200	Weak transcription	HSMMtube	muscle
13	chr10:119037200-119044000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:119038800-119050000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:119039800-119044200	Weak transcription	Hela-S3	cervix
16	chr10:119040400-119050200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:119040800-119050600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:119041000-119050000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:119041200-119045600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:119041200-119050000	Strong transcription	Liver	Liver
21	chr10:119041200-119051000	Weak transcription	Right Ventricle	heart
22	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:119041600-119046200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr10:119041800-119071600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:119042000-119043600	Weak transcription	NHDF-Ad	bronchial
26	chr10:119042000-119050000	Strong transcription	Fetal Intestine Large	intestine
27	chr10:119042000-119053200	Weak transcription	Colonic Mucosa	Colon
28	chr10:119042200-119044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:119042200-119044800	Strong transcription	NH-A	brain
30	chr10:119042200-119046400	Strong transcription	Duodenum Mucosa	Duodenum
31	chr10:119042200-119064200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr10:119042400-119044000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:119042600-119043600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr10:119042600-119044000	Enhancers	Thymus	Thymus
35	chr10:119042600-119044200	Weak transcription	NHLF	lung
36	chr10:119042600-119045000	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr10:119042600-119045000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:119042600-119045000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:119042600-119045000	Strong transcription	Fetal Lung	lung
40	chr10:119042600-119045400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:119042600-119045400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:119042600-119045400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:119042600-119045600	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:119042600-119045600	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:119042600-119045600	Strong transcription	Fetal Kidney	kidney
46	chr10:119042600-119046400	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:119042600-119046600	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:119042600-119046600	Strong transcription	HMEC	breast
49	chr10:119042600-119047200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr10:119042600-119047800	Strong transcription	Primary hematopoietic stem cells	blood

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