Variant report

Variant	rs363397
Chromosome Location	chr10:119007385-119007386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12412905	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2240779	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2283135	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2283136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532806	0.98[ASN][1000 genomes]
rs2803815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs363336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363387	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs363400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58634906	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7099849	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7393602	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74159130	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119001600-119010200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:119001600-119013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:119001800-119008000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:119001800-119011800	Weak transcription	Ovary	ovary
5	chr10:119002200-119008200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:119006000-119008200	Weak transcription	Brain Germinal Matrix	brain
7	chr10:119006200-119007800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:119006400-119008200	Enhancers	NHDF-Ad	bronchial
9	chr10:119006600-119007400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:119006600-119007400	Flanking Active TSS	Thymus	Thymus
11	chr10:119006800-119007400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:119007000-119007400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr10:119007000-119007400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
14	chr10:119007000-119007600	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr10:119007200-119007400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:119007200-119007400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr10:119007200-119007400	Flanking Active TSS	Fetal Thymus	thymus
18	chr10:119007200-119008200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links