Variant report

Variant	rs58634906
Chromosome Location	chr10:118986090-118986091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12414893	0.82[EUR][1000 genomes]
rs12414919	0.82[EUR][1000 genomes]
rs2240779	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2283135	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2283136	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2299615	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2532805	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2803815	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs363317	0.80[AMR][1000 genomes]
rs363336	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs363365	0.82[AMR][1000 genomes]
rs363387	0.90[EUR][1000 genomes]
rs363397	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs363400	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7099849	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7393602	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74159130	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118981600-118987200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:118983200-118986200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:118983200-118986600	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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