Variant report

Variant	rs36534
Chromosome Location	chr14:71914424-71914425
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2041331	0.84[ASN][1000 genomes]
rs36531	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36533	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs40621	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41216	0.90[ASN][1000 genomes]
rs41220	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs41228	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7149924	0.81[ASN][1000 genomes]
rs8015579	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8019634	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71885800-71915400	Weak transcription	Pancreas	Pancrea
2	chr14:71900000-71927200	Weak transcription	Primary B cells from cord blood	blood
3	chr14:71900200-71915800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:71900400-71915400	Weak transcription	Gastric	stomach
5	chr14:71901400-71915800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:71905600-71919200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr14:71905800-71915400	Weak transcription	Small Intestine	intestine
8	chr14:71906400-71927000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:71907000-71918800	Weak transcription	HMEC	breast
10	chr14:71907000-71930000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:71907000-71930600	Weak transcription	HSMM	muscle
12	chr14:71907200-71915200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:71907200-71915400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:71907200-71921400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:71907400-71915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:71907400-71921400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:71908200-71935400	Weak transcription	Primary T cells from cord blood	blood
18	chr14:71908400-71915800	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:71911600-71915400	Weak transcription	Ovary	ovary
20	chr14:71911800-71918800	Weak transcription	Osteobl	bone
21	chr14:71911800-71921600	Weak transcription	Brain Angular Gyrus	brain
22	chr14:71912200-71915800	Weak transcription	Fetal Heart	heart
23	chr14:71912800-71915000	Weak transcription	NHDF-Ad	bronchial
24	chr14:71912800-71918800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:71912800-71920000	Weak transcription	Right Atrium	heart
26	chr14:71912800-71921600	Weak transcription	Aorta	Aorta
27	chr14:71913000-71915600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr14:71913200-71915200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:71913200-71927000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:71913400-71915000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:71914000-71927000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr14:71914200-71915600	Weak transcription	GM12878-XiMat	blood

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