Variant report

Variant	rs8015579
Chromosome Location	chr14:71812414-71812415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11620849	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36531	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36533	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36534	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs40621	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41216	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41220	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41228	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs718854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8019634	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv1831401	chr14:71786411-71845264	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71788600-71817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:71789800-71820000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:71792200-71819400	Weak transcription	NHEK	skin
4	chr14:71792800-71813000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:71792800-71820000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:71792800-71820000	Weak transcription	Pancreas	Pancrea
7	chr14:71794800-71816400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:71795000-71821800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:71795200-71812800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:71795200-71819600	Weak transcription	HSMM	muscle
11	chr14:71795200-71820000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:71795200-71821600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:71795400-71813000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:71795800-71821400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:71797200-71821800	Weak transcription	HSMMtube	muscle
16	chr14:71797600-71821200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:71798800-71818000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:71799400-71812800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:71800400-71819200	Weak transcription	Hela-S3	cervix
20	chr14:71800600-71816200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:71800600-71822200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:71801400-71821000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:71805200-71818800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:71805200-71822200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr14:71805400-71828600	Weak transcription	Dnd41	blood
26	chr14:71806000-71819400	Weak transcription	Primary T cells from cord blood	blood
27	chr14:71806600-71838400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:71806800-71817600	Weak transcription	Osteobl	bone
29	chr14:71807000-71821600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr14:71807600-71822000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr14:71808000-71813000	Weak transcription	K562	blood
32	chr14:71808000-71818600	Weak transcription	NH-A	brain
33	chr14:71808200-71822200	Weak transcription	Fetal Intestine Small	intestine
34	chr14:71808400-71822000	Weak transcription	Small Intestine	intestine
35	chr14:71808400-71829800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr14:71808600-71813200	Weak transcription	Liver	Liver
37	chr14:71808600-71821400	Weak transcription	Primary B cells from cord blood	blood
38	chr14:71808600-71821600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr14:71808800-71838600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:71810200-71820000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr14:71810600-71813200	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:71810600-71822400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr14:71810800-71816000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:71810800-71817400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:71810800-71822200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:71812000-71816000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:71812000-71821600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:71812000-71821800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr14:71812200-71813000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr14:71812200-71813000	Weak transcription	GM12878-XiMat	blood

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