Variant report

Variant	rs365785
Chromosome Location	chr19:44309292-44309293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10401526	0.87[ASN][1000 genomes]
rs10402032	0.87[ASN][1000 genomes]
rs10407794	0.83[ASN][1000 genomes]
rs189445	0.81[ASN][1000 genomes]
rs2033492	0.83[ASN][1000 genomes]
rs349026	0.81[ASN][1000 genomes]
rs349027	0.81[ASN][1000 genomes]
rs349031	0.83[ASN][1000 genomes]
rs349036	0.81[ASN][1000 genomes]
rs364691	0.97[ASN][1000 genomes]
rs436031	0.95[ASN][1000 genomes]
rs444694	0.95[ASN][1000 genomes]
rs492099	0.90[ASN][1000 genomes]
rs531471	0.90[ASN][1000 genomes]
rs7251009	0.80[ASN][1000 genomes]
rs8100565	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs365785	ZNF155	cis	Skin Sun Exposed Lower leg	GTEx
rs365785	LYPD5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44304600-44310200	Weak transcription	HMEC	breast
2	chr19:44304600-44310200	Weak transcription	NHEK	skin
3	chr19:44309200-44310400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr19:44309200-44311000	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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