Variant report

Variant	rs436031
Chromosome Location	chr19:44308649-44308650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10401526	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10402032	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs349056	0.81[AMR][1000 genomes]
rs364691	0.98[ASN][1000 genomes]
rs365785	0.95[ASN][1000 genomes]
rs444694	0.92[ASN][1000 genomes]
rs492099	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs531471	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6509117	0.82[ASN][1000 genomes]
rs6509118	0.82[ASN][1000 genomes]
rs8100565	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44304600-44309000	Weak transcription	Spleen	Spleen
2	chr19:44304600-44310200	Weak transcription	HMEC	breast
3	chr19:44304600-44310200	Weak transcription	NHEK	skin
4	chr19:44308600-44308800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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