Variant report

Variant	rs349056
Chromosome Location	chr19:44305171-44305172
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44285151..44287673-chr19:44304698..44307522,2	K562	blood:
2	chr19:44301885..44304341-chr19:44304382..44306763,2	K562	blood:

Variant related genes	Relation type
ENSG00000104783	Chromatin interaction
ENSG00000159871	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10401526	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10402032	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10407794	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10426849	0.80[ASN][1000 genomes]
rs11666781	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11673595	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11673603	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1865108	1.00[YRI][hapmap]
rs189445	0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2033492	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2195980	0.80[ASN][1000 genomes]
rs34257765	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34424221	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs349026	0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs349027	0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs349031	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs349035	0.82[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs349036	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs349037	0.80[ASN][1000 genomes]
rs349054	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs379758	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs436031	0.81[AMR][1000 genomes]
rs492099	0.84[AMR][1000 genomes]
rs531471	0.84[AMR][1000 genomes]
rs7251009	0.82[ASN][1000 genomes]
rs7258953	0.80[ASN][1000 genomes]
rs797272	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44304200-44308600	Weak transcription	K562	blood
2	chr19:44304600-44309000	Weak transcription	Spleen	Spleen
3	chr19:44304600-44310200	Weak transcription	HMEC	breast
4	chr19:44304600-44310200	Weak transcription	NHEK	skin

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