Variant report

Variant	rs365924
Chromosome Location	chr3:78815416-78815417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12330466	1.00[AMR][1000 genomes]
rs12330828	1.00[AMR][1000 genomes]
rs13319888	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162816	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs173004	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs231606	1.00[AMR][1000 genomes]
rs333473	0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333477	1.00[YRI][hapmap]
rs333482	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333492	1.00[AMR][1000 genomes]
rs333494	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333496	0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333500	1.00[AMR][1000 genomes]
rs333504	0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333505	1.00[AMR][1000 genomes]
rs333509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333510	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs365492	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs375298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs383189	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs390060	1.00[AMR][1000 genomes]
rs408455	1.00[AMR][1000 genomes]
rs416640	0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892483	1.00[AMR][1000 genomes]
rs72896415	1.00[AMR][1000 genomes]
rs9631524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9631525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810277	1.00[AMR][1000 genomes]
rs9813851	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs9817612	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs9822237	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs9849099	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs9861640	0.92[YRI][hapmap]
rs9872311	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877019	chr3:78808850-78877217	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78814600-78815600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:78814600-78816600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:78814800-78815600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:78814800-78815600	Enhancers	Brain Anterior Caudate	brain
5	chr3:78814800-78815600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:78814800-78816200	Enhancers	Fetal Brain Male	brain
7	chr3:78815200-78815800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:78815400-78815600	Active TSS	A549	lung

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