Variant report

Variant	rs390060
Chromosome Location	chr3:78819245-78819246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12330466	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12330828	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13319888	1.00[AMR][1000 genomes]
rs162816	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs173004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs231606	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333473	1.00[AMR][1000 genomes]
rs333480	0.81[AFR][1000 genomes]
rs333482	1.00[AMR][1000 genomes]
rs333492	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333494	1.00[AMR][1000 genomes]
rs333496	1.00[AMR][1000 genomes]
rs333500	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333504	1.00[AMR][1000 genomes]
rs333505	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs333509	1.00[AMR][1000 genomes]
rs365492	1.00[AMR][1000 genomes]
rs365924	1.00[AMR][1000 genomes]
rs375298	1.00[AMR][1000 genomes]
rs383189	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs408455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs416640	1.00[AMR][1000 genomes]
rs72892483	1.00[AMR][1000 genomes]
rs72894478	0.90[AFR][1000 genomes]
rs72896415	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9631524	1.00[AMR][1000 genomes]
rs9631525	1.00[AMR][1000 genomes]
rs9810277	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9813851	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9817612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9822237	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9841731	0.85[AFR][1000 genomes]
rs9849099	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863633	0.80[AFR][1000 genomes]
rs9872311	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877019	chr3:78808850-78877217	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78816600-78822000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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