Variant report

Variant	rs9841731
Chromosome Location	chr3:78884201-78884202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12330466	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12330828	0.94[YRI][hapmap];1.00[AFR][1000 genomes]
rs1480688	0.88[YRI][hapmap]
rs162816	0.81[YRI][hapmap];0.90[AFR][1000 genomes]
rs173004	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs1843786	0.94[YRI][hapmap]
rs333492	0.86[AFR][1000 genomes]
rs333505	0.88[AFR][1000 genomes]
rs390060	0.85[AFR][1000 genomes]
rs408455	0.85[AFR][1000 genomes]
rs72894478	0.95[AFR][1000 genomes]
rs72896415	0.98[AFR][1000 genomes]
rs7640421	0.88[YRI][hapmap]
rs9810277	0.88[AFR][1000 genomes]
rs9817612	0.86[AFR][1000 genomes]
rs9822237	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs9840011	0.88[YRI][hapmap]
rs9863633	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9881587	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78873200-78888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:78875600-78884400	Weak transcription	NHDF-Ad	bronchial
3	chr3:78875600-78888800	Weak transcription	Fetal Lung	lung
4	chr3:78882000-78894800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:78882600-78885200	Enhancers	HepG2	liver
6	chr3:78883200-78884400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:78883400-78888800	Weak transcription	Brain Substantia Nigra	brain
8	chr3:78883600-78888800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:78884000-78884600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links