Variant report

Variant	rs366161
Chromosome Location	chr3:21447525-21447526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21439015..21441958-chr3:21447248..21448760,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1083091	0.81[EUR][1000 genomes]
rs148456	0.80[EUR][1000 genomes]
rs1507814	0.82[EUR][1000 genomes]
rs1621650	0.82[EUR][1000 genomes]
rs1656662	0.82[EUR][1000 genomes]
rs1656666	0.82[EUR][1000 genomes]
rs1697711	0.82[EUR][1000 genomes]
rs1697713	0.82[EUR][1000 genomes]
rs341856	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs341863	0.80[EUR][1000 genomes]
rs386371	0.82[EUR][1000 genomes]
rs387517	0.83[JPT][hapmap]
rs388126	0.82[EUR][1000 genomes]
rs397440	0.82[EUR][1000 genomes]
rs400572	0.82[EUR][1000 genomes]
rs405338	0.82[EUR][1000 genomes]
rs407886	0.82[EUR][1000 genomes]
rs409062	0.86[EUR][1000 genomes]
rs409972	0.84[EUR][1000 genomes]
rs411616	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs423727	0.82[EUR][1000 genomes]
rs423879	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs430203	0.82[EUR][1000 genomes]
rs430387	0.81[EUR][1000 genomes]
rs440905	0.81[EUR][1000 genomes]
rs442920	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs446992	0.82[EUR][1000 genomes]
rs711729	0.81[EUR][1000 genomes]
rs776642	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs776644	0.86[EUR][1000 genomes]
rs800605	0.81[EUR][1000 genomes]
rs9866352	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21433600-21447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:21435400-21451800	Weak transcription	Aorta	Aorta
3	chr3:21445800-21448400	Active TSS	K562	blood
4	chr3:21447200-21448000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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