Variant report

Variant	rs36733
Chromosome Location	chr5:94168290-94168291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94167988..94169723-chr5:94173484..94175826,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs153895	0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs153897	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs171659	0.95[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs39715	0.81[CHB][hapmap];0.90[YRI][hapmap]
rs40172	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs43212	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59281718	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36733	RGMB	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:94162400-94184800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:94162600-94169600	Weak transcription	Gastric	stomach
5	chr5:94163400-94182600	Weak transcription	Brain Anterior Caudate	brain
6	chr5:94163800-94209800	Weak transcription	Dnd41	blood
7	chr5:94164000-94169000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94164000-94185800	Weak transcription	Primary T cells from cord blood	blood
9	chr5:94164600-94168600	Weak transcription	Fetal Brain Female	brain
10	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:94165200-94183400	Weak transcription	Lung	lung
12	chr5:94165400-94169000	Enhancers	Fetal Thymus	thymus
13	chr5:94165400-94185600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:94165600-94182200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:94165800-94172800	Weak transcription	HUVEC	blood vessel
16	chr5:94165800-94182400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:94165800-94183400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
19	chr5:94166000-94170400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr5:94166000-94172200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:94168000-94168600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:94168000-94168600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:94168200-94168400	Enhancers	Fetal Brain Male	brain
24	chr5:94168200-94168600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr5:94168200-94168800	Enhancers	Thymus	Thymus

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