Variant report

Variant	rs171659
Chromosome Location	chr5:94154020-94154021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs153895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs153897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1549177	0.83[JPT][hapmap]
rs185308	0.83[JPT][hapmap]
rs185310	0.83[JPT][hapmap]
rs255334	0.83[JPT][hapmap]
rs255353	0.84[JPT][hapmap]
rs255371	0.83[JPT][hapmap]
rs255375	0.83[JPT][hapmap]
rs36733	0.95[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs39715	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs40172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs43212	0.83[ASN][1000 genomes]
rs4869118	0.83[JPT][hapmap]
rs59281718	0.91[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130200-94161600	Weak transcription	HUVEC	blood vessel
2	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94140200-94163800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94148000-94164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94153800-94155400	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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