Variant report

Variant	rs255371
Chromosome Location	chr5:94118098-94118099
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94116573..94118173-chr5:94121053..94123346,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs153895	0.84[JPT][hapmap]
rs153897	0.84[JPT][hapmap]
rs1549177	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs171659	0.83[JPT][hapmap]
rs185308	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs185310	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194256	0.86[CHB][hapmap]
rs255334	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255335	0.81[CHB][hapmap]
rs255337	0.86[CHB][hapmap]
rs255338	0.86[CHB][hapmap]
rs255340	0.86[CHB][hapmap]
rs255341	0.90[CHB][hapmap]
rs255342	0.81[CHB][hapmap]
rs255343	0.85[CHB][hapmap]
rs255347	0.81[CHB][hapmap]
rs255348	0.85[CHB][hapmap]
rs255349	0.83[ASN][1000 genomes]
rs255350	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs255351	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs255352	0.86[CHB][hapmap]
rs255353	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs255373	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255374	0.91[ASN][1000 genomes]
rs255375	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255376	0.81[CHB][hapmap]
rs40172	0.84[JPT][hapmap]
rs4869118	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7706425	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs255371	MCTP1	cis	uninvolved skin	skin_eQTL
rs255371	MCTP1	cis	lesional skin	skin_eQTL
rs255371	MCTP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
3	chr5:94097800-94128400	Weak transcription	Primary T cells from cord blood	blood
4	chr5:94102200-94128000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94104800-94128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94105200-94127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:94106000-94126000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:94106000-94126000	Weak transcription	Lung	lung
9	chr5:94106400-94128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:94112200-94128600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:94114400-94128200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:94114800-94122800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr5:94114800-94124600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr5:94115000-94123400	Weak transcription	Fetal Thymus	thymus
15	chr5:94115400-94125600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr5:94115800-94119600	Weak transcription	Hela-S3	cervix

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