Variant report

Variant	rs7706425
Chromosome Location	chr5:94090731-94090732
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1549177	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084024	0.91[AFR][1000 genomes]
rs185308	0.94[ASN][1000 genomes]
rs185310	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255334	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255335	0.83[ASN][1000 genomes]
rs255353	0.87[ASN][1000 genomes]
rs255371	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255373	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255374	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs255375	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255376	0.81[ASN][1000 genomes]
rs4869118	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711390	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7706425	MCTP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94083000-94108000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
4	chr5:94085200-94105800	Weak transcription	Fetal Thymus	thymus
5	chr5:94086200-94101800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:94087400-94100400	Weak transcription	Spleen	Spleen
7	chr5:94089600-94107800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94090400-94090800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:94090400-94091400	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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