Variant report

Variant	rs255376
Chromosome Location	chr5:94106249-94106250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10059576	0.92[JPT][hapmap]
rs1027741	0.93[JPT][hapmap]
rs11135413	0.84[JPT][hapmap]
rs12152973	0.92[JPT][hapmap]
rs12152974	0.92[JPT][hapmap]
rs12518668	0.92[JPT][hapmap]
rs12653136	0.92[JPT][hapmap]
rs1549177	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs17084077	0.93[JPT][hapmap]
rs17084091	0.92[JPT][hapmap]
rs17084157	0.83[JPT][hapmap]
rs185308	0.86[CHB][hapmap]
rs185310	0.86[CHB][hapmap]
rs194256	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs194257	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs255334	0.86[CHB][hapmap]
rs255335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255336	0.84[ASN][1000 genomes]
rs255337	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255338	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255340	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255341	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs255342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs255343	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs255344	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs255345	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs255347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs255348	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs255349	0.84[ASN][1000 genomes]
rs255350	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs255351	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs255352	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs255353	0.86[CHB][hapmap]
rs255371	0.81[CHB][hapmap]
rs255375	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs4869118	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs718184	0.84[JPT][hapmap]
rs7706425	0.81[ASN][1000 genomes]
rs7706606	0.93[JPT][hapmap]
rs7707642	0.93[JPT][hapmap]
rs7711390	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7727729	0.93[JPT][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94083000-94108000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
4	chr5:94089600-94107800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr5:94097800-94128400	Weak transcription	Primary T cells from cord blood	blood
6	chr5:94102200-94128000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:94102600-94111800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:94104800-94128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:94105200-94109800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:94105200-94127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:94105800-94106800	Strong transcription	Fetal Thymus	thymus
12	chr5:94106000-94126000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:94106000-94126000	Weak transcription	Lung	lung

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