Variant report

Variant	rs12152973
Chromosome Location	chr5:94148951-94148952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94146676..94148666-chr5:94148670..94150444,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10059576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1027741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11135413	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12152974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs12653136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[ASN][1000 genomes]
rs12657029	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs149198	0.81[ASN][1000 genomes]
rs153847	0.88[CHB][hapmap]
rs153900	0.81[ASN][1000 genomes]
rs159602	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs17084077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17084091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17084157	0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs194256	0.92[JPT][hapmap]
rs255212	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs255335	0.92[JPT][hapmap]
rs255337	0.92[JPT][hapmap]
rs255338	0.92[JPT][hapmap]
rs255342	0.92[JPT][hapmap]
rs255347	0.92[JPT][hapmap]
rs255352	0.92[JPT][hapmap]
rs255367	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs255376	0.92[JPT][hapmap]
rs35448590	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35749798	0.92[ASN][1000 genomes]
rs36014084	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4143487	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs568600	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs58312534	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61614515	0.88[ASN][1000 genomes]
rs6868059	0.87[ASN][1000 genomes]
rs6871880	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs718184	0.94[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs73776909	0.91[ASN][1000 genomes]
rs73776910	0.91[ASN][1000 genomes]
rs7706606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7727729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130200-94161600	Weak transcription	HUVEC	blood vessel
2	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94140200-94163800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94148000-94164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94148600-94150600	Weak transcription	Fetal Thymus	thymus

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