Variant report

Variant	rs255347
Chromosome Location	chr5:94127599-94127600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD32-1	chr5:94127551-94128555	ENSG00000249175.1

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10059576	0.92[JPT][hapmap]
rs1027741	0.92[JPT][hapmap]
rs11135413	0.83[JPT][hapmap]
rs12152973	0.92[JPT][hapmap]
rs12152974	0.92[JPT][hapmap]
rs12518668	0.92[JPT][hapmap]
rs12653136	0.92[JPT][hapmap]
rs1549177	0.85[CHB][hapmap]
rs17084077	0.92[JPT][hapmap]
rs17084091	0.92[JPT][hapmap]
rs17084157	0.82[JPT][hapmap]
rs185308	0.85[CHB][hapmap]
rs185310	0.85[CHB][hapmap]
rs194256	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194257	0.98[ASN][1000 genomes]
rs255334	0.85[CHB][hapmap]
rs255335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs255336	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255337	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs255338	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs255340	0.95[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs255341	0.89[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs255342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs255343	0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs255344	0.98[ASN][1000 genomes]
rs255345	0.98[ASN][1000 genomes]
rs255346	0.93[ASN][1000 genomes]
rs255348	0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs255349	0.87[ASN][1000 genomes]
rs255350	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs255351	0.89[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs255352	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs255353	0.86[CHB][hapmap]
rs255371	0.81[CHB][hapmap]
rs255376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4869118	0.85[CHB][hapmap]
rs718184	0.83[JPT][hapmap]
rs7706606	0.92[JPT][hapmap]
rs7707642	0.92[JPT][hapmap]
rs7711390	0.86[ASN][1000 genomes]
rs7727729	0.92[JPT][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94097800-94128400	Weak transcription	Primary T cells from cord blood	blood
3	chr5:94102200-94128000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:94104800-94128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:94105200-94127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94106400-94128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:94112200-94128600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:94114400-94128200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:94120800-94127800	Weak transcription	GM12878-XiMat	blood
10	chr5:94122600-94129600	Weak transcription	Adipose Nuclei	Adipose
11	chr5:94122800-94128800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:94124200-94127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:94124600-94131000	Weak transcription	Small Intestine	intestine
14	chr5:94124600-94132200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:94124800-94128200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:94124800-94128400	Weak transcription	Primary B cells from cord blood	blood
17	chr5:94124800-94129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:94125000-94127600	Weak transcription	Dnd41	blood
19	chr5:94125600-94128800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr5:94126400-94127600	Weak transcription	Lung	lung
21	chr5:94126400-94128000	Enhancers	Fetal Thymus	thymus
22	chr5:94126400-94128600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr5:94126600-94127800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr5:94126600-94129000	Weak transcription	Gastric	stomach
25	chr5:94127400-94128800	Strong transcription	HUVEC	blood vessel
26	chr5:94127400-94130000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr5:94127400-94131600	Enhancers	Thymus	Thymus

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