Variant report

Variant	rs255344
Chromosome Location	chr5:94131308-94131309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs194256	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs194257	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255335	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255336	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs255337	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255338	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255340	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255341	0.91[ASN][1000 genomes]
rs255342	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255343	0.93[ASN][1000 genomes]
rs255345	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255346	0.91[ASN][1000 genomes]
rs255347	0.98[ASN][1000 genomes]
rs255348	0.89[ASN][1000 genomes]
rs255349	0.87[ASN][1000 genomes]
rs255350	0.87[ASN][1000 genomes]
rs255351	0.87[ASN][1000 genomes]
rs255352	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255376	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7711390	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94124600-94132200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr5:94127400-94131600	Enhancers	Thymus	Thymus
3	chr5:94127600-94131600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr5:94127800-94131400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:94127800-94131600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr5:94128000-94131400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:94128000-94131400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr5:94128000-94131600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr5:94128000-94131600	Weak transcription	Lung	lung
10	chr5:94128200-94131600	Enhancers	Primary B cells from peripheral blood	blood
11	chr5:94128400-94131400	Enhancers	Primary T cells from cord blood	blood
12	chr5:94128400-94131400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:94128400-94131400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr5:94128800-94131600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr5:94129600-94131400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:94129600-94131600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr5:94129600-94133800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:94129800-94131400	Enhancers	Dnd41	blood
19	chr5:94129800-94131600	Genic enhancers	Fetal Thymus	thymus
20	chr5:94130200-94161600	Weak transcription	HUVEC	blood vessel
21	chr5:94130400-94131600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr5:94130400-94137000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr5:94130400-94141600	Weak transcription	Adipose Nuclei	Adipose
24	chr5:94130400-94145000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:94130600-94131400	Flanking Active TSS	GM12878-XiMat	blood
27	chr5:94130600-94134600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr5:94130800-94134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:94131000-94134600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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