Variant report

Variant	rs255343
Chromosome Location	chr5:94132163-94132164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94131519..94133257-chr5:94133949..94135629,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs153847	0.86[JPT][hapmap]
rs1549177	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs159602	0.87[JPT][hapmap]
rs185308	0.90[CHB][hapmap];0.97[CHD][hapmap]
rs185310	0.90[CHB][hapmap];0.93[CHD][hapmap]
rs194256	0.90[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs194257	0.93[ASN][1000 genomes]
rs255212	0.87[JPT][hapmap]
rs255334	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs255335	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs255336	0.92[ASN][1000 genomes]
rs255337	0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs255338	0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs255340	0.90[CHB][hapmap];0.95[CHD][hapmap];0.92[ASN][1000 genomes]
rs255341	0.94[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255342	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs255344	0.93[ASN][1000 genomes]
rs255345	0.93[ASN][1000 genomes]
rs255346	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255347	0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs255348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255349	0.94[ASN][1000 genomes]
rs255350	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs255351	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255352	0.90[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs255353	0.90[CHB][hapmap]
rs255367	0.87[JPT][hapmap]
rs255371	0.85[CHB][hapmap]
rs255375	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs255376	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs4143487	0.87[JPT][hapmap]
rs4869118	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs568600	0.93[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs255343	CAST	cis	parietal	SCAN
rs255343	MCTP1	cis	lymphoblastoid	seeQTL
rs255343	C5orf36	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94124600-94132200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr5:94129600-94133800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:94130200-94161600	Weak transcription	HUVEC	blood vessel
4	chr5:94130400-94137000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94130400-94141600	Weak transcription	Adipose Nuclei	Adipose
6	chr5:94130400-94145000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:94130600-94134600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94130800-94134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:94131000-94134600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:94131600-94133000	Weak transcription	Fetal Thymus	thymus
12	chr5:94131600-94134600	Strong transcription	Primary monocytes fromperipheralblood	blood

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