Variant report

Variant	rs153847
Chromosome Location	chr5:94193239-94193240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10059576	0.88[CHB][hapmap];0.91[CHD][hapmap]
rs1027741	0.88[CHB][hapmap]
rs11135413	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs12152973	0.88[CHB][hapmap]
rs12152974	0.88[CHB][hapmap];0.91[CHD][hapmap]
rs12518668	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs12653136	0.88[CHB][hapmap]
rs149198	0.85[ASN][1000 genomes]
rs153900	0.85[ASN][1000 genomes]
rs159602	0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs17084077	0.88[CHB][hapmap]
rs17084091	0.87[CHB][hapmap]
rs17084157	0.94[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs255212	0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs255341	0.86[JPT][hapmap]
rs255343	0.86[JPT][hapmap]
rs255348	0.86[JPT][hapmap]
rs255350	0.86[JPT][hapmap]
rs255351	0.86[JPT][hapmap]
rs255367	0.94[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];0.82[ASN][1000 genomes]
rs35749798	0.80[ASN][1000 genomes]
rs4143487	0.94[CHB][hapmap];0.94[CHD][hapmap];0.87[JPT][hapmap];0.93[MEX][hapmap];0.81[ASN][1000 genomes]
rs566805	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs568600	1.00[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61614515	0.84[ASN][1000 genomes]
rs6868059	0.87[ASN][1000 genomes]
rs718184	0.94[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap]
rs73776909	0.81[ASN][1000 genomes]
rs73776910	0.81[ASN][1000 genomes]
rs7706606	0.88[CHB][hapmap]
rs7707642	0.88[CHB][hapmap]
rs7727729	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94163800-94209800	Weak transcription	Dnd41	blood
2	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
4	chr5:94175600-94194600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
6	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:94186000-94200400	Weak transcription	Primary T cells from cord blood	blood
8	chr5:94186200-94194000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:94186400-94208000	Weak transcription	Fetal Thymus	thymus
10	chr5:94189800-94199400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:94190200-94196000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:94191400-94199000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:94191400-94199200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:94191600-94199200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:94192000-94194000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr5:94192400-94193400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:94192800-94194200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr5:94193000-94196600	Weak transcription	HUVEC	blood vessel
20	chr5:94193000-94201600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr5:94193200-94202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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