Variant report

Variant	rs12518668
Chromosome Location	chr5:94182887-94182888
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10059576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1027741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11135413	0.94[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs12152973	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs12152974	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.96[ASN][1000 genomes]
rs12653136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12657029	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs149198	0.83[ASN][1000 genomes]
rs153847	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs153900	0.83[ASN][1000 genomes]
rs159602	0.94[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs17084077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17084091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084157	0.94[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs194256	0.92[JPT][hapmap]
rs255212	0.94[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs255335	0.92[JPT][hapmap]
rs255337	0.92[JPT][hapmap]
rs255338	0.92[JPT][hapmap]
rs255342	0.92[JPT][hapmap]
rs255347	0.92[JPT][hapmap]
rs255352	0.92[JPT][hapmap]
rs255367	0.94[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs255376	0.92[JPT][hapmap]
rs35448590	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35749798	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36014084	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143487	0.94[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs566805	0.81[ASN][1000 genomes]
rs568600	0.94[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs58312534	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61614515	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6868059	0.89[ASN][1000 genomes]
rs6871880	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs718184	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73776909	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73776910	0.95[ASN][1000 genomes]
rs7706606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7707642	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7727729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94162400-94184800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:94163800-94209800	Weak transcription	Dnd41	blood
4	chr5:94164000-94185800	Weak transcription	Primary T cells from cord blood	blood
5	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:94165200-94183400	Weak transcription	Lung	lung
7	chr5:94165400-94185600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:94165800-94183400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
10	chr5:94169200-94185800	Weak transcription	Fetal Brain Female	brain
11	chr5:94170600-94187400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:94170800-94185200	Weak transcription	Fetal Brain Male	brain
13	chr5:94171600-94185200	Weak transcription	Left Ventricle	heart
14	chr5:94173000-94189000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:94175600-94194600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:94176000-94185200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:94176000-94186000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr5:94176600-94190000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:94177800-94183200	Weak transcription	Thymus	Thymus
20	chr5:94179800-94188200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:94181200-94184400	Enhancers	Fetal Thymus	thymus
22	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
23	chr5:94181400-94185600	Weak transcription	Brain Angular Gyrus	brain
24	chr5:94181800-94183600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr5:94182200-94183200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr5:94182200-94183800	Strong transcription	HUVEC	blood vessel
27	chr5:94182400-94183000	Enhancers	Brain Cingulate Gyrus	brain
28	chr5:94182400-94183800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:94182400-94184400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:94182600-94183000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr5:94182600-94183200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr5:94182600-94183200	Enhancers	Brain Anterior Caudate	brain
33	chr5:94182600-94185800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:94182800-94183000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr5:94182800-94183000	Enhancers	Brain Hippocampus Middle	brain

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