Variant report

Variant	rs255342
Chromosome Location	chr5:94139726-94139727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10059576	0.92[JPT][hapmap]
rs1027741	0.93[JPT][hapmap]
rs11135413	0.84[JPT][hapmap]
rs12152973	0.92[JPT][hapmap]
rs12152974	0.92[JPT][hapmap]
rs12518668	0.92[JPT][hapmap]
rs12653136	0.92[JPT][hapmap]
rs1549177	0.86[CHB][hapmap]
rs17084077	0.93[JPT][hapmap]
rs17084091	0.92[JPT][hapmap]
rs17084157	0.83[JPT][hapmap]
rs185308	0.86[CHB][hapmap]
rs185310	0.86[CHB][hapmap]
rs194256	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs194257	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255334	0.86[CHB][hapmap]
rs255335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs255336	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs255337	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255338	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255340	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255341	0.90[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs255343	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs255344	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255345	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255346	0.88[ASN][1000 genomes]
rs255347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs255348	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs255349	0.84[ASN][1000 genomes]
rs255350	0.90[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs255351	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs255352	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs255353	0.86[CHB][hapmap]
rs255371	0.81[CHB][hapmap]
rs255375	0.80[CHB][hapmap]
rs255376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4869118	0.86[CHB][hapmap]
rs718184	0.84[JPT][hapmap]
rs7706606	0.93[JPT][hapmap]
rs7707642	0.93[JPT][hapmap]
rs7711390	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7727729	0.93[JPT][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130200-94161600	Weak transcription	HUVEC	blood vessel
2	chr5:94130400-94141600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:94130400-94145000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94134200-94141400	Weak transcription	Fetal Thymus	thymus
6	chr5:94134600-94145400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:94139400-94140200	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:94139600-94139800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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