Variant report

Variant	rs255349
Chromosome Location	chr5:94124754-94124755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD32-1	chr5:94124494-94125045	ENSG00000249175.1

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs185308	0.84[ASN][1000 genomes]
rs185310	0.83[ASN][1000 genomes]
rs194256	0.86[ASN][1000 genomes]
rs194257	0.87[ASN][1000 genomes]
rs255335	0.83[ASN][1000 genomes]
rs255336	0.86[ASN][1000 genomes]
rs255337	0.86[ASN][1000 genomes]
rs255338	0.86[ASN][1000 genomes]
rs255340	0.86[ASN][1000 genomes]
rs255341	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs255342	0.84[ASN][1000 genomes]
rs255343	0.94[ASN][1000 genomes]
rs255344	0.87[ASN][1000 genomes]
rs255345	0.87[ASN][1000 genomes]
rs255346	0.94[ASN][1000 genomes]
rs255347	0.87[ASN][1000 genomes]
rs255348	0.93[ASN][1000 genomes]
rs255350	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255351	1.00[ASN][1000 genomes]
rs255352	0.93[ASN][1000 genomes]
rs255353	0.80[ASN][1000 genomes]
rs255371	0.83[ASN][1000 genomes]
rs255373	0.83[ASN][1000 genomes]
rs255375	0.80[ASN][1000 genomes]
rs255376	0.84[ASN][1000 genomes]
rs7711390	0.84[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
3	chr5:94097800-94128400	Weak transcription	Primary T cells from cord blood	blood
4	chr5:94102200-94128000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94104800-94128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94105200-94127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:94106000-94126000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:94106000-94126000	Weak transcription	Lung	lung
9	chr5:94106400-94128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:94112200-94128600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:94114400-94128200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:94115400-94125600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr5:94120800-94127800	Weak transcription	GM12878-XiMat	blood
14	chr5:94122600-94129600	Weak transcription	Adipose Nuclei	Adipose
15	chr5:94122800-94128800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:94123400-94126000	Strong transcription	Fetal Thymus	thymus
17	chr5:94124000-94124800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:94124000-94124800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:94124200-94124800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:94124200-94127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:94124600-94124800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr5:94124600-94131000	Weak transcription	Small Intestine	intestine
23	chr5:94124600-94132200	Strong transcription	Primary neutrophils fromperipheralblood	blood

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