Variant report

Variant	rs255348
Chromosome Location	chr5:94127358-94127359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs153847	0.86[JPT][hapmap]
rs1549177	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs159602	0.87[JPT][hapmap]
rs185308	0.90[CHB][hapmap];0.97[CHD][hapmap]
rs185310	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs194256	0.90[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs194257	0.89[ASN][1000 genomes]
rs255212	0.87[JPT][hapmap]
rs255334	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs255335	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs255336	0.89[ASN][1000 genomes]
rs255337	0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs255338	0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs255340	0.90[CHB][hapmap];0.95[CHD][hapmap];0.89[ASN][1000 genomes]
rs255341	0.94[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255342	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs255343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255344	0.89[ASN][1000 genomes]
rs255345	0.89[ASN][1000 genomes]
rs255346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255347	0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs255349	0.93[ASN][1000 genomes]
rs255350	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs255351	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs255352	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs255353	0.90[CHB][hapmap]
rs255367	0.87[JPT][hapmap]
rs255371	0.85[CHB][hapmap]
rs255375	0.85[CHB][hapmap];0.92[CHD][hapmap]
rs255376	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs4143487	0.87[JPT][hapmap]
rs4869118	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs568600	0.93[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs255348	C5orf36	cis	cerebellum	SCAN
rs255348	CAST	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94097800-94128400	Weak transcription	Primary T cells from cord blood	blood
3	chr5:94102200-94128000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:94104800-94128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:94105200-94127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94106400-94128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:94112200-94128600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:94114400-94128200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:94120800-94127800	Weak transcription	GM12878-XiMat	blood
10	chr5:94122600-94129600	Weak transcription	Adipose Nuclei	Adipose
11	chr5:94122800-94128800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:94124200-94127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:94124600-94131000	Weak transcription	Small Intestine	intestine
14	chr5:94124600-94132200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:94124800-94128200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:94124800-94128400	Weak transcription	Primary B cells from cord blood	blood
17	chr5:94124800-94129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:94125000-94127600	Weak transcription	Dnd41	blood
19	chr5:94125600-94128800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr5:94126200-94127400	Weak transcription	HUVEC	blood vessel
21	chr5:94126400-94127600	Weak transcription	Lung	lung
22	chr5:94126400-94128000	Enhancers	Fetal Thymus	thymus
23	chr5:94126400-94128600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:94126600-94127800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr5:94126600-94129000	Weak transcription	Gastric	stomach

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