Variant report

Variant	rs255340
Chromosome Location	chr5:94137371-94137372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1549177	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs185308	0.81[CHB][hapmap];0.93[CHD][hapmap]
rs185310	0.81[CHB][hapmap];0.93[CHD][hapmap]
rs194256	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs194257	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255334	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs255335	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs255336	1.00[ASN][1000 genomes]
rs255337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255341	0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[ASN][1000 genomes]
rs255342	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255343	0.90[CHB][hapmap];0.95[CHD][hapmap];0.92[ASN][1000 genomes]
rs255344	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255345	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255346	0.90[ASN][1000 genomes]
rs255347	0.95[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs255348	0.90[CHB][hapmap];0.95[CHD][hapmap];0.89[ASN][1000 genomes]
rs255349	0.86[ASN][1000 genomes]
rs255350	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs255351	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[ASN][1000 genomes]
rs255352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs255353	0.81[CHB][hapmap]
rs255371	0.86[CHB][hapmap]
rs255375	0.86[CHB][hapmap];0.93[CHD][hapmap]
rs255376	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869118	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs7711390	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs255340	MCTP1	cis	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130200-94161600	Weak transcription	HUVEC	blood vessel
2	chr5:94130400-94141600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:94130400-94145000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94132200-94139400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94134200-94141400	Weak transcription	Fetal Thymus	thymus
7	chr5:94134600-94145400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94137000-94137600	Strong transcription	Primary hematopoietic stem cells	blood

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